3P5L	Lyase Inhibitor	date	Oct 08, 2010
title	Human Carbonic Anhydrase Complexed With Sodium 4-Cyano-4- Phenylpiperidine-1-Carbodithioate
authors	M.Aggarwal, R.Mckenna
compound		source
Molecule: Carbonic Anhydrase 2 Chain: A Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II; Ec: 4.2.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ca2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Plyss Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1 21 1	R_factor 0.166 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.325 41.310 72.169 90.00 104.45 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	DMS, IT5, ZN	enzyme	Lyase E.C.4.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Dithiocarbamates: a new class of carbonic anhydrase inhibitors. Crystallographic and kinetic investigations., Carta F, Aggarwal M, Maresca A, Scozzafava A, McKenna R, Supuran CT, Chem Commun (Camb). 2012 Feb 11;48(13):1868-70. Epub 2012 Jan 5. PMID:22218610

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (3p5l.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 3P5L CSU: Contacts of Structural Units for 3P5L Structure Factors (426 Kb) Retrieve 3P5L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P5L from S2C, [Save to disk] Re-refined 3p5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P5L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P5L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P5L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p5l_A] [3p5l] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3P5L: [Carb_anhydrase ] by SMART

Other resources with information on 3P5L

Community annotation for 3P5L at PDBWiki (http://pdbwiki.org)

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