3P5N Transport Protein date Oct 09, 2010
title Structure And Mechanism Of The S Component Of A Bacterial Ec Transporter
authors P.Zhang, J.Wang, Y.Shi
compound source
Molecule: Riboflavin Uptake Protein
Chain: A, B
Synonym: Ribu
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 548473
Strain: Tch60
Gene: Hmpref0772_2174
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.265 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.434 94.244 115.402 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.60 Å
ligand RBF enzyme
Gene HMPREF0772
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • transmembrane transporter ac...


    • Primary referenceStructure and mechanism of the S component of a bacterial ECF transporter., Zhang P, Wang J, Shi Y, Nature. 2010 Dec 2;468(7324):717-20. Epub 2010 Oct 24. PMID:20972419
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3p5n.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3P5N
  • CSU: Contacts of Structural Units for 3P5N
  • Structure Factors (248 Kb)
  • Retrieve 3P5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P5N from S2C, [Save to disk]
  • Re-refined 3p5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P5N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P5N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p5n_B] [3p5n_A] [3p5n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3P5N
  • Community annotation for 3P5N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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