3P66 Hydrolase date Oct 11, 2010
title Time-Dependent And Protein-Directed In Situ Growth Of Gold Nanoparticles In A Single Crystal Of Lysozyme
authors H.Wei, Z.Wang, J.Zhang, S.House, Y.G.Gao, L.Yang, H.Robinson, L.H. H.Xing, C.Hou, I.M.Robertson, J.M.Zuo, Y.Lu
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Bantam,Chickens
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.543 78.543 37.154 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.36 Å
ligand AU3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTime-dependent, protein-directed growth of gold nanoparticles within a single crystal of lysozyme., Wei H, Wang Z, Zhang J, House S, Gao YG, Yang L, Robinson H, Tan LH, Xing H, Hou C, Robertson IM, Zuo JM, Lu Y, Nat Nanotechnol. 2011 Feb;6(2):93-7. Epub 2011 Jan 30. PMID:21278750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (3p66.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3p66.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3P66
  • CSU: Contacts of Structural Units for 3P66
  • Structure Factors (198 Kb)
  • Retrieve 3P66 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P66 from S2C, [Save to disk]
  • Re-refined 3p66 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P66 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P66
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P66, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p66_A] [3p66]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P66: [LYZ1 ] by SMART
    • Other resources with information on 3P66
  • Community annotation for 3P66 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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