3P78 Transferase Transferase Inhibitor date Oct 12, 2010
title P38 Inhibitor-Bound
authors K.K.Moffett, H.Namboodiri
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Crk1, Mitogen-Activated Pr Kinase P38 Alpha, Map Kinase P38 Alpha;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Mapk14, Crk1, Csbp1, Csbp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.241 R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.810 70.990 76.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand BOG, P78 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a novel class of non-ATP site DFG-out state p38 inhibitors utilizing computationally assisted virtual fragment-based drug design (vFBDD)., Moffett K, Konteatis Z, Nguyen D, Shetty R, Ludington J, Fujimoto T, Lee KJ, Chai X, Namboodiri H, Karpusas M, Dorsey B, Guarnieri F, Bukhtiyarova M, Springman E, Michelotti E, Bioorg Med Chem Lett. 2011 Sep 28. PMID:22014550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3p78.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3P78
  • CSU: Contacts of Structural Units for 3P78
  • Structure Factors (241 Kb)
  • Retrieve 3P78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P78 from S2C, [Save to disk]
  • Re-refined 3p78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P78
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P78, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p78_A] [3p78]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P78: [S_TKc ] by SMART
  • Other resources with information on 3P78
  • Community annotation for 3P78 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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