3P89 Transcription Inhibitor date Oct 13, 2010
title Fxr Bound To A Quinolinecarboxylic Acid
authors K.P.Madauss, S.P.Williams, D.N.Deaton
compound source
Molecule: Farnesoid X Receptor
Chain: A
Fragment: Unp Residues 244-472
Synonym: Nuclear Receptor Subfamily 1, Group H, Member 4, I Cra_a;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcg_20893, Nr1h4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Coactivator 1
Chain: B
Fragment: Unp Residues 745-755
Synonym: Steroid Receptor Coactivator 1, Src-1
Ec: 2.3.1.48
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bhlhe74, Ncoa1, Src1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: F 2 3
R_factor 0.225 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.911 159.911 159.911 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 89P, SO4 BindingDB enzyme Transferase E.C.2.3.1.48 BRENDA
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformationally constrained farnesoid X receptor (FXR) agonists: heteroaryl replacements of the naphthalene., Bass JY, Caravella JA, Chen L, Creech KL, Deaton DN, Madauss KP, Marr HB, McFadyen RB, Miller AB, Mills WY, Navas F 3rd, Parks DJ, Smalley TL Jr, Spearing PK, Todd D, Williams SP, Wisely GB, Bioorg Med Chem Lett. 2011 Feb 15;21(4):1206-13. Epub 2010 Dec 23. PMID:21256005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3p89.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (3p89.pdb2.gz) 234 Kb
  • Biological Unit Coordinates (3p89.pdb3.gz) 932 Kb
  • LPC: Ligand-Protein Contacts for 3P89
  • CSU: Contacts of Structural Units for 3P89
  • Structure Factors (221 Kb)
  • Retrieve 3P89 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P89 from S2C, [Save to disk]
  • Re-refined 3p89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P89 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P89
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P89, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p89_B] [3p89] [3p89_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P89: [HOLI ] by SMART
  • Other resources with information on 3P89
  • Community annotation for 3P89 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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