3P8D Protein Binding date Oct 13, 2010
title Crystal Structure Of The Second Tudor Domain Of Human Phf20 Form)
authors G.Cui, J.Lee, J.R.Thompson, M.V.Botuyan, G.Mer
compound source
Molecule: Medulloblastoma Antigen Mu-Mb-50.72
Chain: A, B
Fragment: Unp Residues 84-147
Synonym: Phd Finger Protein 20
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptev
symmetry Space Group: P 43
R_factor 0.228 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.548 48.548 96.149 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53., Cui G, Park S, Badeaux AI, Kim D, Lee J, Thompson JR, Yan F, Kaneko S, Yuan Z, Botuyan MV, Bedford MT, Cheng JQ, Mer G, Nat Struct Mol Biol. 2012 Aug 5. doi: 10.1038/nsmb.2353. PMID:22864287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3p8d.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 3P8D
  • Structure Factors (105 Kb)
  • Retrieve 3P8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P8D from S2C, [Save to disk]
  • Re-refined 3p8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P8D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P8D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p8d] [3p8d_A] [3p8d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P8D: [TUDOR ] by SMART
  • Other resources with information on 3P8D
  • Community annotation for 3P8D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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