3P97	Transferase Transferase Inhibitor	date	Oct 16, 2010
title	Dengue 3 Ns5 Methyltransferase Bound To The Substrate S-Aden Methionine
authors	C.G.Noble, L.J.Yap, J.Lescar
compound		source
Molecule: Non-Structural Protein 5 Chain: A, C Fragment: N-Terminal Domain Ec: 2.1.1.56, 2.1.1.57 Engineered: Yes		Organism_scientific: Dengue Virus 3 Organism_taxid: 11069 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
symmetry	Space Group: P 2 21 21	R_factor 0.192 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.818 61.097 186.035 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	SAM	enzyme	Transferase E.C.2.1.1.56 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Small molecule inhibitors that selectively block dengue virus methyltransferase., Lim SP, Sonntag LS, Noble C, Nilar SH, Ng RH, Zou G, Monaghan P, Chung KY, Dong H, Liu B, Bodenreider C, Lee G, Ding M, Chan WL, Wang G, Jian YL, Chao AT, Lescar J, Yin Z, Vedananda TR, Keller TH, Shi PY, J Biol Chem. 2011 Feb 25;286(8):6233-40. Epub 2010 Dec 8. PMID:21147775

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (3p97.pdb1.gz) 49 Kb Biological Unit Coordinates (3p97.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 3P97 CSU: Contacts of Structural Units for 3P97 Structure Factors (959 Kb) Retrieve 3P97 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P97 from S2C, [Save to disk] Re-refined 3p97 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P97 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P97

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P97, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p97_A] [3p97] [3p97_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3P97

Community annotation for 3P97 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---