3P9W	Signaling Protein Immune System	date	Oct 18, 2010
title	Crystal Structure Of An Engineered Human Autonomous Vh Domai Complex With Vegf
authors	X.Ma, C.Wiesmann
compound		source
Molecule: Vascular Endothelial Growth Factor A Chain: A, C, E, G Fragment: Unp Residues 7-110 Synonym: Engineered Human Autonomous Vh Domain, Vegf-A, Va Permeability Factor, Vpf; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rp1-261g23.1-009, Vegf, Vegfa Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
Molecule: Human Vegf Chain: B, D, F, H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.727 132.908 175.481 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.41 Å
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Design of Synthetic Autonomous V Domain Libraries and Structural Analysis of a V Domain Bound to Vascular Endothelial Growth Factor., Ma X, Barthelemy PA, Rouge L, Wiesmann C, Sidhu SS, J Mol Biol. 2013 Mar 16. pii: S0022-2836(13)00168-X. doi:, 10.1016/j.jmb.2013.03.020. PMID:23507309

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (3p9w.pdb1.gz) 41 Kb Biological Unit Coordinates (3p9w.pdb2.gz) 39 Kb Biological Unit Coordinates (3p9w.pdb3.gz) 41 Kb Biological Unit Coordinates (3p9w.pdb4.gz) 40 Kb CSU: Contacts of Structural Units for 3P9W Structure Factors (593 Kb) Retrieve 3P9W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P9W from S2C, [Save to disk] Re-refined 3p9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P9W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P9W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P9W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p9w_C] [3p9w] [3p9w_E] [3p9w_F] [3p9w_G] [3p9w_D] [3p9w_H] [3p9w_A] [3p9w_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3P9W: [IGv] [PDGF ] by SMART

Other resources with information on 3P9W

Community annotation for 3P9W at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---