3P9Z Ligase date Oct 18, 2010
title Crystal Structure Of Uroporphyrinogen-III Synthetase From He Pylori 26695
authors B.Nocek, A.Stein, G.Chhor, R.J.Fenske, K.Buck, A.Joachimiak, Midwe For Structural Genomics (Mcsg)
compound source
Molecule: Uroporphyrinogen III Cosynthase (Hemd)
Chain: A
Engineered: Yes
 Organism_scientific: Helicobacter Pylori
Organism_taxid: 210
Gene: Hp_1224
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector: Pmcsg19b
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.407 57.676 74.624 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MLI, MSE enzyme
Gene HP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3p9z.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3P9Z
  • CSU: Contacts of Structural Units for 3P9Z
  • Structure Factors (211 Kb)
  • Retrieve 3P9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P9Z from S2C, [Save to disk]
  • Re-refined 3p9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P9Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P9Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p9z] [3p9z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3P9Z
  • Community annotation for 3P9Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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