3PB1 Hydrolase Inhibitor Hydrolase date Oct 20, 2010
title Crystal Structure Of A Michaelis Complex Between Plasminogen Inhibitor-1 And Urokinase-Type Plasminogen Activator
authors Z.Lin, L.Jiang, M.Huang, Structure 2 Function Project (S2f)
compound source
Molecule: Plasminogen Activator Inhibitor 1
Chain: I
Synonym: Pai, Pai-1, Endothelial Plasminogen Activator Inhi Serpin E1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Serpine1, Pai1, Planh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Plasminogen Activator, Urokinase
Chain: E
Fragment: Unp Residues 143-395
Ec: 3.4.21.73
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plau, Rp11-417o11.1-002
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 32 2 1
R_factor 0.220 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.711 97.711 171.916 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme Hydrolase E.C.3.4.21.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E


I
  • negative regulation of endop...
  • negative regulation of smoot...

  • Primary referenceStructural basis for recognition of urokinase-type plasminogen activator by plasminogen activator inhibitor-1., Lin Z, Jiang L, Yuan C, Jensen JK, Zhang X, Luo Z, Furie BC, Furie B, Andreasen PA, Huang M, J Biol Chem. 2011 Mar 4;286(9):7027-32. Epub 2011 Jan 3. PMID:21199867
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3pb1.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3PB1
  • CSU: Contacts of Structural Units for 3PB1
  • Structure Factors (641 Kb)
  • Retrieve 3PB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PB1 from S2C, [Save to disk]
  • Re-refined 3pb1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PB1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PB1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2g3pb1, region B:2-67 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pb1] [3pb1_E] [3pb1_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3PB1: [SERPIN] [Tryp_SPc ] by SMART
  • Other resources with information on 3PB1
  • Community annotation for 3PB1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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