3PEQ	Transcription Transcription Agonist	date	Oct 27, 2010
title	Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
authors	M.H.Lambert, K.A.Evans, B.G.Shearer, D.D.Wisnoski, D.Shi, J.Jin, R.A.Rivero, S.M.Sparks, D.A.Winegar, A.N.Billin, C.Britt, J.M.Wa L.M.Leesnitzer, R.V.Merrihew
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Delta Chain: A, B Fragment: Unp Residues 171-441 Synonym: Ppar-Delta, Nuci, Nuclear Hormone Receptor 1, Nuc1 Receptor Subfamily 1 Group C Member 2, Peroxisome Prolifera Activated Receptor Beta, Ppar-Beta; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1c2, Pparb, Ppard Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prseta
symmetry	Space Group: P 1 21 1	R_factor 0.199 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.472 95.535 96.537 90.00 97.76 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	3EQ, IOD, JZR	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Phenoxyacetic acids as PPARdelta partial agonists: synthesis, optimization, and in vivo efficacy., Evans KA, Shearer BG, Wisnoski DD, Shi D, Sparks SM, Sternbach DD, Winegar DA, Billin AN, Britt C, Way JM, Epperly AH, Leesnitzer LM, Merrihew RV, Xu RX, Lambert MH, Jin J, Bioorg Med Chem Lett. 2011 Apr 15;21(8):2345-50. Epub 2011 Mar 15. PMID:21414782

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (3peq.pdb1.gz) 89 Kb Biological Unit Coordinates (3peq.pdb2.gz) 87 Kb Biological Unit Coordinates (3peq.pdb3.gz) 175 Kb LPC: Ligand-Protein Contacts for 3PEQ CSU: Contacts of Structural Units for 3PEQ Structure Factors (411 Kb) Retrieve 3PEQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PEQ from S2C, [Save to disk] Re-refined 3peq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PEQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PEQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PEQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3peq_B] [3peq_A] [3peq] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PEQ: [HOLI ] by SMART

Other resources with information on 3PEQ

Community annotation for 3PEQ at PDBWiki (http://pdbwiki.org)

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