3PFS Protein Binding date Oct 29, 2010
title Pwwp Domain Of Human Bromodomain And Phd Finger-Containing P
authors R.Lam, H.Zeng, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M. J.Min, H.Wu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain And Phd Finger-Containing Protein 3
Chain: A, B
Fragment: Pwwp Domain (Unp Residues 1056-1195)
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brpf3, Kiaa1286
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 2
R_factor 0.211 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.412 134.522 30.226 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4, ZN enzyme
Primary referenceStructural and Histone Binding Ability Characterizations of Human PWWP Domains., Wu H, Zeng H, Lam R, Tempel W, Amaya MF, Xu C, Dombrovski L, Qiu W, Wang Y, Min J, PLoS One. 2011;6(6):e18919. Epub 2011 Jun 20. PMID:21720545
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3pfs.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3pfs.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3PFS
  • CSU: Contacts of Structural Units for 3PFS
  • Structure Factors (519 Kb)
  • Retrieve 3PFS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PFS from S2C, [Save to disk]
  • Re-refined 3pfs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PFS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PFS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PFS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pfs_A] [3pfs_B] [3pfs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PFS: [PWWP ] by SMART
    • Other resources with information on 3PFS
  • Community annotation for 3PFS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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