3PIK Transport Protein date Nov 06, 2010
title Outer Membrane Protein Cusc
authors B.Van Den Berg
compound source
Molecule: Cation Efflux System Protein Cusc
Chain: A
Fragment: Unp Residues 18-457
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Cusc, Ibeb, Ylcb, B0572, Jw0561
symmetry Space Group: H 3 2
R_factor 0.197 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.030 89.030 473.037 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4, UNL enzyme
note 3PIK is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Escherichia coli CusC, the Outer Membrane Component of a Heavy Metal Efflux Pump., Kulathila R, Kulathila R, Indic M, van den Berg B, PLoS One. 2011 Jan 7;6(1):e15610. PMID:21249122
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3pik.pdb1.gz) 401 Kb
  • LPC: Ligand-Protein Contacts for 3PIK
  • CSU: Contacts of Structural Units for 3PIK
  • Structure Factors (332 Kb)
  • Retrieve 3PIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PIK from S2C, [Save to disk]
  • Re-refined 3pik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PIK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PIK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pik] [3pik_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PIK
  • Community annotation for 3PIK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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