3PJ8 Transferase Transferase Inhibitor date Nov 09, 2010
title Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]Pyrimidin Bioisostere Of Roscovitine.
authors I.W.Mcnae, R.Jorda, L.Havlicek, M.Strnad, J.Voller, M.D.Walkinsha V.Krystof
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.350 71.890 72.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand 404 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePyrazolo[4,3-d]pyrimidine Bioisostere of Roscovitine: Evaluation of a Novel Selective Inhibitor of Cyclin-dependent Kinases with Antiproliferative Activity., Jorda R, Havlicek L, McNae IW, Walkinshaw MD, Voller J, Sturc A, Navratilova J, Kuzma M, Mistrik M, Bartek J, Strnad M, Krystof V, J Med Chem. 2011 Mar 21. PMID:21417417
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3pj8.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3PJ8
  • CSU: Contacts of Structural Units for 3PJ8
  • Structure Factors (1030 Kb)
  • Retrieve 3PJ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PJ8 from S2C, [Save to disk]
  • Re-refined 3pj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PJ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PJ8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PJ8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pj8] [3pj8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PJ8: [S_TKc ] by SMART
  • Other resources with information on 3PJ8
  • Community annotation for 3PJ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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