3PJZ Transport Protein date Nov 10, 2010
title Crystal Structure Of The Potassium Transporter Trkh From Vib Parahaemolyticus
authors Y.Cao, X.Jin, H.Huang, E.J.Levin, M.Zhou, New York Consortium On Protein Structure (Nycomps)
compound source
Molecule: Potassium Uptake Protein Trkh
Chain: A, B
Engineered: Yes
Organism_scientific: Vibrio Parahaemolyticus
Organism_taxid: 670
Gene: Vp0032
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.249 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.489 97.406 195.653 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.51 Å
ligand K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a potassium ion transporter, TrkH., Cao Y, Jin X, Huang H, Derebe MG, Levin EJ, Kabaleeswaran V, Pan Y, Punta M, Love J, Weng J, Quick M, Ye S, Kloss B, Bruni R, Martinez-Hackert E, Hendrickson WA, Rost B, Javitch JA, Rajashankar KR, Jiang Y, Zhou M, Nature. 2011 Feb 13. PMID:21317882
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3pjz.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 3PJZ
  • CSU: Contacts of Structural Units for 3PJZ
  • Structure Factors (156 Kb)
  • Retrieve 3PJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PJZ from S2C, [Save to disk]
  • Re-refined 3pjz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PJZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PJZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pjz] [3pjz_A] [3pjz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PJZ
  • Community annotation for 3PJZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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