3PLV	Peptide Binding Protein	date	Nov 15, 2010
title	Structure Of Hub-1 Protein In Complex With Snu66 Peptide (Hi
authors	S.K.Mishra, T.Ammon, G.M.Popowicz, M.Krajewski, R.J.Nagel, M.Ares T.A.Holak, S.Jentsch
compound		source
Molecule: Ubiquitin-Like Modifier Hub1 Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Hub1, Ynr032c-A Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28
Molecule: 66 Kda U4u6.U5 Small Nuclear Ribonucleoprotein C Chain: C Fragment: Hindii Domain Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932
symmetry	Space Group: P 21 21 2	R_factor 0.201 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.720 83.570 35.110 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing., Mishra SK, Ammon T, Popowicz GM, Krajewski M, Nagel RJ, Ares M, Holak TA, Jentsch S, Nature. 2011 May 25. PMID:21614000

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk] Biological Unit Coordinates (3plv.pdb1.gz) 19 Kb CSU: Contacts of Structural Units for 3PLV Structure Factors (65 Kb) Retrieve 3PLV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PLV from S2C, [Save to disk] Re-refined 3plv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PLV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PLV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PLV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3plv_A] [3plv] [3plv_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PLV: [UBQ ] by SMART

Other resources with information on 3PLV

Community annotation for 3PLV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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