3PMQ Electron Transport date Nov 17, 2010
title Crystal Structure Of The Outer Membrane Decaheme Cytochrome
authors T.A.Clarke, M.J.Edwards, D.J.Richardson
compound source
Molecule: Decaheme Cytochrome C Mtrf
Chain: A
 Organism_scientific: Shewanella Oneidensis
Organism_taxid: 211586
Strain: Mr-1
Cellular_location: Outer Membrane
symmetry Space Group: I 2 3
R_factor 0.305 R_Free 0.321
crystal
cell
length a length b length c angle alpha angle beta angle gamma
256.640 256.640 256.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CA, HEC enzyme
Primary referenceStructure of a bacterial cell surface decaheme electron conduit., Clarke TA, Edwards MJ, Gates AJ, Hall A, White GF, Bradley J, Reardon CL, Shi L, Beliaev AS, Marshall MJ, Wang Z, Watmough NJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Proc Natl Acad Sci U S A. 2011 May 23. PMID:21606337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (3pmq.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 3PMQ
  • CSU: Contacts of Structural Units for 3PMQ
  • Structure Factors (372 Kb)
  • Retrieve 3PMQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PMQ from S2C, [Save to disk]
  • Re-refined 3pmq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PMQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PMQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PMQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pmq] [3pmq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PMQ
  • Community annotation for 3PMQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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