3POX Membrane Protein date Nov 23, 2010
title Crystal Structure Of E.Coli Ompf Porin In Lipidic Cubic Phas Group P1
authors R.G.Efremov, L.A.Sazanov
compound source
Molecule: Ompf Protein
Chain: A, B, C, D, E, F
Fragment: Unp Residues 23-362
Synonym: Outer Membrane Protein F
 Organism_scientific: Escherichia Coli
Organism_taxid: 511693
Strain: Bl21
symmetry Space Group: P 1
R_factor 0.188 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.574 86.017 116.558 83.28 78.46 89.89
method X-Ray Diffractionresolution 2.00 Å
ligand K, OLC, SCN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • colicin transmembrane transp...


    • Primary referenceStructure of Escherichia coli OmpF porin from lipidic mesophase., Efremov RG, Sazanov LA, J Struct Biol. 2012 Jun;178(3):311-8. Epub 2012 Mar 29. PMID:22484237
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (688 Kb) [Save to disk]
  • Biological Unit Coordinates (3pox.pdb1.gz) 343 Kb
  • Biological Unit Coordinates (3pox.pdb2.gz) 335 Kb
  • LPC: Ligand-Protein Contacts for 3POX
  • CSU: Contacts of Structural Units for 3POX
  • Structure Factors (9859 Kb)
  • Retrieve 3POX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3POX from S2C, [Save to disk]
  • Re-refined 3pox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3POX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3POX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3POX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pox_E] [3pox_F] [3pox_D] [3pox_B] [3pox] [3pox_A] [3pox_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3POX
  • Community annotation for 3POX at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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