3PR2 Lyase date Nov 29, 2010
title Tryptophan Synthase Indoline Quinonoid Structure With F9 Inh Alpha Site
authors J.Lai, D.Niks, Y.Wang, T.Domratcheva, T.R.M.Barends, F.Schwarz, R. D.W.Elliott, M.Q.Fatmi, C.A.Chang, I.Schlichting, M.F.Dunn, L.J.
compound source
Molecule: Tryptophan Synthase Alpha Chain
Chain: A
Ec: 4.2.1.20
Engineered: Yes
Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
Gene: Stm1727, Trpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Cb149
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pstb7

Molecule: Tryptophan Synthase Beta Chain
Chain: B
Ec: 4.2.1.20
Engineered: Yes

Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
Gene: Stm1726, Trpb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Cb149
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pstb7
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.170 60.620 67.380 90.00 94.62 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand 7MN, CS, F9F enzyme Lyase E.C.4.2.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceX-ray and NMR crystallography in an enzyme active site: the indoline quinonoid intermediate in tryptophan synthase., Lai J, Niks D, Wang Y, Domratcheva T, Barends TR, Schwarz F, Olsen RA, Elliott DW, Fatmi MQ, Chang CE, Schlichting I, Dunn MF, Mueller LJ, J Am Chem Soc. 2011 Jan 12;133(1):4-7. Epub 2010 Dec 10. PMID:21142052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (3pr2.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 3PR2
  • CSU: Contacts of Structural Units for 3PR2
  • Structure Factors (497 Kb)
  • Retrieve 3PR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PR2 from S2C, [Save to disk]
  • Re-refined 3pr2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PR2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PR2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pr2_B] [3pr2] [3pr2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PR2
  • Community annotation for 3PR2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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