3PRF	Transferase Transferase Inhibitor	date	Nov 29, 2010
title	Crystal Structure Of Human B-Raf Kinase Domain In Complex Wi Oxime Furopyridine Inhibitor
authors	W.C.Voegtli, G.P.A.Vigers, T.Morales, B.J.Brandhuber
compound		source
Molecule: Serinethreonine-Protein Kinase B-Raf Chain: A, B Fragment: Kinase Domain, Unp Residues 432-726 Synonym: Proto-Oncogene B-Raf, P94, V-Raf Murine Sarcoma Vi Oncogene Homolog B1; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pbac4x-1
symmetry	Space Group: P 41 21 2	R_factor 0.269 R_Free 0.310
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.188 100.188 164.606 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	FP3	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Non-oxime inhibitors of B-Raf(V600E) kinase., Ren L, Wenglowsky S, Miknis G, Rast B, Buckmelter AJ, Ely RJ, Schlachter S, Laird ER, Randolph N, Callejo M, Martinson M, Galbraith S, Brandhuber BJ, Vigers G, Morales T, Voegtli WC, Lyssikatos J, Bioorg Med Chem Lett. 2010 Dec 19. PMID:21251822

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (3prf.pdb1.gz) 43 Kb Biological Unit Coordinates (3prf.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 3PRF CSU: Contacts of Structural Units for 3PRF Structure Factors (337 Kb) Retrieve 3PRF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PRF from S2C, [Save to disk] Re-refined 3prf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PRF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PRF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PRF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3prf_B] [3prf] [3prf_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PRF: [STYKc ] by SMART

Other resources with information on 3PRF

Community annotation for 3PRF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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