3PRP Structural analysis of a viral OTU domain protease from the Crimean-Congo Hemorrhagic Fever virus in complex with human ubiquitin date
authors Capodagli, G.C., McKercher, M.A., Baker, E.A., Masters, E.M., Brunzelle, J.S., Pegan, S.D.
compound source
symmetry
R_factor
R_Free 0.2120
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 3CN, 4LJ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural analysis of a viral ovarian tumor domain protease from the Crimean-Congo Hemorrhagic Fever virus in complex with covalently bonded ubiquitin., Capodagli GC, McKercher MA, Baker EA, Masters EM, Brunzelle JS Dr, Pegan SD Dr, J Virol. 2011 Jan 12. PMID:21228232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (3prp.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (3prp.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3PRP
  • CSU: Contacts of Structural Units for 3PRP
  • Structure Factors (724 Kb)
  • Retrieve 3PRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PRP from S2C, [Save to disk]
  • Re-refined 3prp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PRP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PRP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3prp_B] [3prp_D] [3prp_A] [3prp_C] [3prp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PRP: [UBQ ] by SMART
  • Other resources with information on 3PRP
  • Community annotation for 3PRP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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