3PRW Structural Protein date Nov 30, 2010
title Crystal Structure Of The Lipoprotein Bamb
authors A.Heuck, T.Clausen
compound source
Molecule: Lipoprotein Yfgl
Chain: A
Fragment: Unp Residues 21-392
Synonym: Protein Assembly Complex, Lipoprotein Component
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Yfgl, B2512, Jw2496
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: I 2 2 2
R_factor 0.183 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.221 120.967 134.117 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAugmenting beta-augmentation: structural basis of how BamB binds BamA and may support folding of outer membrane proteins., Heuck A, Schleiffer A, Clausen T, J Mol Biol. 2011 Mar 11;406(5):659-66. Epub 2011 Jan 12. PMID:21236263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3prw.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 3PRW
  • Structure Factors (478 Kb)
  • Retrieve 3PRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PRW from S2C, [Save to disk]
  • Re-refined 3prw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PRW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PRW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3prw] [3prw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PRW: [PQQ ] by SMART
  • Other resources with information on 3PRW
  • Community annotation for 3PRW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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