3PS5	Hydrolase, Signaling Protein	date	Nov 30, 2010
title	Crystal Structure Of The Full-Length Human Protein Tyrosine Phosphatase Shp-1
authors	W.Wang, L.Liu, X.Song, Y.Mo, C.Komma, H.D.Bellamy, Z.J.Zhao, G.W.Zh
compound		source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 6 Chain: A Synonym: Hematopoietic Cell Protein-Tyrosine Phosphatase, P Tyrosine Phosphatase 1c, Ptp-1c, Protein-Tyrosine Phosphata Sh-Ptp1; Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptpn6, Hcp, Ptp1c Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7
symmetry	Space Group: H 3 2	R_factor 0.225 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 231.919 231.919 78.852 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	SO4	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of human protein tyrosine phosphatase SHP-1 in the open conformation., Wang W, Liu L, Song X, Mo Y, Komma C, Bellamy HD, Zhao ZJ, Zhou GW, J Cell Biochem. 2011 Apr 4. doi: 10.1002/jcb.23125. PMID:21465528

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (3ps5.pdb1.gz) 79 Kb Biological Unit Coordinates (3ps5.pdb2.gz) 156 Kb LPC: Ligand-Protein Contacts for 3PS5 CSU: Contacts of Structural Units for 3PS5 Structure Factors (241 Kb) Retrieve 3PS5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PS5 from S2C, [Save to disk] Re-refined 3ps5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PS5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PS5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PS5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ps5_A] [3ps5] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3PS5: [PTPc] [SH2 ] by SMART

Other resources with information on 3PS5

Community annotation for 3PS5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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