3PSM Antimicrobial Protein date Dec 01, 2010
title .98a Crystal Structure Of A Dimeric Plant Defensin Spe10
authors H.Zhou, X.Song, W.Gong
compound source
Molecule: Defensin
Chain: A, B
Synonym: Spe10
Organism_scientific: Pachyrhizus Erosus
Organism_common: Jicama,Potato-Bean,Yam-Bean
Organism_taxid: 109171
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.714 28.111 54.853 90.00 103.78 90.00
method X-Ray Diffractionresolution 0.98 Å
note 3PSM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3psm.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 3PSM
  • Structure Factors (332 Kb)
  • Retrieve 3PSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PSM from S2C, [Save to disk]
  • Re-refined 3psm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PSM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PSM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3psm] [3psm_B] [3psm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PSM: [Knot1 ] by SMART
  • Other resources with information on 3PSM
  • Community annotation for 3PSM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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