3PYG Transferase date Dec 13, 2010
title Mycobacterium Tuberculosis 4-Diphosphocytidyl-2-C-Methyl-D-E Kinase (Ispe) In Complex With Adp
authors S.Shan, X.H.Chen, T.Liu, H.C.Zhao, Z.H.Rao, Z.Y.Lou
compound source
Molecule: 4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase
Chain: A
Synonym: Ispe, Cmk, 4-(Cytidine-5'-Diphospho)-2-C-Methyl-D- Kinase;
Ec: 2.7.1.148
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Ispe, Rv1011, Mt1040, Mtci237.28
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.199 73.122 106.958 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand ADP enzyme Transferase E.C.2.7.1.148 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3pyg.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3PYG
  • CSU: Contacts of Structural Units for 3PYG
  • Structure Factors (375 Kb)
  • Retrieve 3PYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PYG from S2C, [Save to disk]
  • Re-refined 3pyg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PYG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PYG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pyg] [3pyg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PYG
  • Community annotation for 3PYG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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