3Q0P Rna Binding Protein Rna date Dec 15, 2010
title Crystal Structure Of The Pumilio-Homology Domain From Human In Complex With Hunchback Nre
authors G.Lu, T.M.T.Hall
compound source
Molecule: Pumilio Homolog 1
Chain: A, B
Fragment: Unp Residues 828-1176
Synonym: Hspum, Pumilio-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pum1, Kiaa0099, Pumh1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb3

Molecule: 5'-R(Upgpupapupapupa)-3'
Chain: C, D
Engineered: Yes

Synthetic: Yes
Other_details: This Rna Occurs In Flies.
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
262.326 37.483 82.299 90.00 102.83 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAlternate modes of cognate RNA recognition by human PUMILIO proteins., Lu G, Hall TM, Structure. 2011 Mar 9;19(3):361-7. PMID:21397187
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3q0p.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (3q0p.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3Q0P
  • CSU: Contacts of Structural Units for 3Q0P
  • Structure Factors (339 Kb)
  • Retrieve 3Q0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q0P from S2C, [Save to disk]
  • Re-refined 3q0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q0P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q0P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q0p_C] [3q0p] [3q0p_D] [3q0p_A] [3q0p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q0P: [Pumilio ] by SMART
  • Other resources with information on 3Q0P
  • Community annotation for 3Q0P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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