3Q34 Structural Genomics, Unknown Function date Dec 21, 2010
title The Crystal Structure Of Ycei-Like Family Protein From Pseud Syringae
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Ycei-Like Family Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pseudomonas Syringae
Organism_taxid: 264730
Strain: Pv. Phaseolicola
Gene: Pspph_4050
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Codon+Ril(P)-Stratagene
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.647 103.357 63.193 90.00 109.04 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, MSE, UQ8 enzyme
Gene PSPPH
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (3q34.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (3q34.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3Q34
  • CSU: Contacts of Structural Units for 3Q34
  • Structure Factors (3613 Kb)
  • Retrieve 3Q34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q34 from S2C, [Save to disk]
  • Re-refined 3q34 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3Q34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3Q34
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q34, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q34_B] [3q34_C] [3q34_A] [3q34] [3q34_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q34: [YceI ] by SMART
    • Other resources with information on 3Q34
  • Community annotation for 3Q34 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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