3Q6S Cell Cycle date Jan 03, 2011
title The Crystal Structure Of The Heterochromatin Protein 1 Beta Chromoshadow Domain Complexed With A Peptide From Shugoshin
authors C.A.Brautigam, J.Chaudhary, H.Yu
compound source
Molecule: Chromobox Protein Homolog 1
Chain: A, B, C, D
Fragment: Chromoshadow Domain, Residues 108-185
Synonym: Hp1hsbeta, Heterochromatin Protein 1 Homolog Beta, Heterochromatin Protein P25, M31, Modifier 1 Protein, P25be
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbx1, Cbx
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Shugoshin-Like 1
Chain: E, F
Fragment: Residues 445-463
Synonym: Hsgo1, Serologically Defined Breast Cancer Antigen
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized Peptide
symmetry Space Group: P 21 21 2
R_factor 0.190 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.816 108.893 41.938 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceMitotic centromeric targeting of HP1 and its binding to Sgo1 are dispensable for sister-chromatid cohesion in human cells., Kang J, Chaudhary J, Dong H, Kim S, Brautigam CA, Yu H, Mol Biol Cell. 2011 Apr 15;22(8):1181-90. doi: 10.1091/mbc.E11-01-0009. Epub 2011, Feb 23. PMID:21346195
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3q6s.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (3q6s.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3Q6S
  • Structure Factors (357 Kb)
  • Retrieve 3Q6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q6S from S2C, [Save to disk]
  • Re-refined 3q6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q6S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q6S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q6s] [3q6s_E] [3q6s_C] [3q6s_D] [3q6s_F] [3q6s_B] [3q6s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3Q6S: [CHROMO] [ChSh ] by SMART
  • Other resources with information on 3Q6S
  • Community annotation for 3Q6S at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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