3Q6Z Transferase date Jan 04, 2011
title Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosin Diphosphoribose
authors T.Karlberg, M.I.Siponen, C.H.Arrowsmith, H.Berglund, C.Bountra, R A.M.Edwards, T.Ekblad, S.Flodin, A.Flores, S.Graslund, T.Kotenyo E.Kouznetsova, M.Moche, P.Nordlund, T.Nyman, C.Persson, A.Sehic, A.G.Thorsell, L.Tresaugues, E.Wahlberg, J.Weigelt, M.Welin, H.Sc Structural Genomics Consortium (Sgc)
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A
Fragment: Macro Domain 1, Residues 708-898
Synonym: Parp-14, B Aggressive Lymphoma Protein 2
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal2, Kiaa1268, Parp14
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 43 21 2
R_factor 0.208 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.357 71.357 71.436 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand APR enzyme Transferase E.C.2.4.2.30 BRENDA
Primary referenceRecognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3q6z.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3Q6Z
  • CSU: Contacts of Structural Units for 3Q6Z
  • Structure Factors (69 Kb)
  • Retrieve 3Q6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q6Z from S2C, [Save to disk]
  • Re-refined 3q6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q6Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q6Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q6z] [3q6z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q6Z: [A1pp ] by SMART
  • Other resources with information on 3Q6Z
  • Community annotation for 3Q6Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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