3Q71 Transferase date Jan 04, 2011
title Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenos Diphosphoribose
authors T.Karlberg, M.I.Siponen, C.H.Arrowsmith, H.Berglund, C.Bountra, R A.M.Edwards, T.Ekblad, S.Flodin, A.Flores, S.Graslund, T.Kotenyo E.Kouznetsova, M.Moche, P.Nordlund, T.Nyman, C.Persson, A.Sehic, A.G.Thorsell, L.Tresaugues, E.Wahlberg, J.Weigelt, M.Welin, H.Sc Structural Genomics Consortium (Sgc)
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A
Fragment: Macro Domain 2
Synonym: Parp-14, B Aggressive Lymphoma Protein 2
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal2, Kiaa1268, Parp14
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 32 2 1
R_factor 0.187 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.350 66.350 110.690 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand AR6 enzyme Transferase E.C.2.4.2.30 BRENDA
Primary referenceRecognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3q71.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3Q71
  • CSU: Contacts of Structural Units for 3Q71
  • Structure Factors (115 Kb)
  • Retrieve 3Q71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q71 from S2C, [Save to disk]
  • Re-refined 3q71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q71
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q71, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q71_A] [3q71]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q71: [A1pp ] by SMART
  • Other resources with information on 3Q71
  • Community annotation for 3Q71 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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