3Q7O Protein Binding date Jan 05, 2011
title The Crystal Structure Of Bamb From The Bam Complex In Spaceg
authors N.Noinaj, J.W.Fairman, S.K.Buchanan
compound source
Molecule: Lipoprotein Yfgl
Chain: A
Fragment: Unp Residues 21-392
Synonym: Bamb
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yfgl, B2512, Jw2496
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 3
R_factor 0.199 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.145 103.145 103.145 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structure of BamB Suggests Interactions with BamA and Its Role within the BAM Complex., Noinaj N, Fairman JW, Buchanan SK, J Mol Biol. 2011 Jan 26. PMID:21277859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3q7o.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 3Q7O
  • Structure Factors (175 Kb)
  • Retrieve 3Q7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q7O from S2C, [Save to disk]
  • Re-refined 3q7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3Q7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3Q7O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q7O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q7o] [3q7o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q7O: [PQQ ] by SMART
    • Other resources with information on 3Q7O
  • Community annotation for 3Q7O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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