3RZF Immune System, Signaling Protein date May 11, 2011
title Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122)
authors G.Xu, Y.C.Lo, Q.Li, G.Napolitano, X.Wu, X.Jiang, M.Dreano, M.Karin,
compound source
Molecule: Mgc80376 Protein
Chain: A
Mutation: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: Clawed Frog,Common Platanna,Platanna
Organism_taxid: 8355
symmetry Space Group: I 41 2 2
R_factor 0.270 R_Free 0.340
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.656 164.656 273.458 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.00 Å
ligand XNM enzyme
note 3RZF supersedes 3QAD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of inhibitor of kappaB kinase beta, Xu G, Lo YC, Li Q, Napolitano G, Wu X, Jiang X, Dreano M, Karin M, Wu H, Nature. 2011 Mar 20. PMID:21423167
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (3rzf.pdb1.gz) 192 Kb
  • LPC: Ligand-Protein Contacts for 3RZF
  • CSU: Contacts of Structural Units for 3RZF
  • Structure Factors (132 Kb)
  • Retrieve 3RZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RZF from S2C, [Save to disk]
  • Re-refined 3rzf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RZF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RZF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rzf] [3rzf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RZF: [STYKc ] by SMART
    • Other resources with information on 3RZF
  • Community annotation for 3RZF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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