3QAM Transferase Transferase Inhibitor date Jan 11, 2011
title Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit O Dependent Protein Kinase
authors J.Yang, J.Wu, J.Steichen, S.S.Taylor
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: E
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Prkaca, Pkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Kinase Inhibitor
Chain: I
Fragment: Unp Residues 6-23
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.412 79.639 60.800 90.00 113.28 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand ATP, MG, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E


I


Primary referenceA conserved Glu-Arg salt bridge connects coevolved motifs that define the eukaryotic protein kinase fold., Yang J, Wu J, Steichen JM, Kornev AP, Deal MS, Li S, Sankaran B, Woods VL Jr, Taylor SS, J Mol Biol. 2012 Jan 27;415(4):666-79. Epub 2011 Nov 25. PMID:22138346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3qam.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3QAM
  • CSU: Contacts of Structural Units for 3QAM
  • Structure Factors (292 Kb)
  • Retrieve 3QAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QAM from S2C, [Save to disk]
  • Re-refined 3qam structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QAM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QAM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qam_E] [3qam_I] [3qam]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3QAM: [S_TK_X] [S_TKc ] by SMART
    • Other resources with information on 3QAM
  • Community annotation for 3QAM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science