3QB4 Cytokine Transferase Receptor date Jan 12, 2011
title Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
authors T.D.Mueller, J.Nickel, W.Sebald
compound source
Molecule: Growthdifferentiation Factor 5
Chain: A, C
Fragment: Gdf-5, Residues 387-501
Synonym: Gdf-5, Cartilage-Derived Morphogenetic Protein 1, Radotermin;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdmp1, Gdf5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rbsiin25xo

Molecule: Bone Morphogenetic Protein Receptor Type-1a
Chain: B, D
Fragment: Bmp Receptor Bmpr-Ia, Residues 24-152
Synonym: Bmp Type-1a Receptor, Bmpr-1a, Activin Receptor-Li 3, Alk-3, Serinethreonine-Protein Kinase Receptor R5, Skr5
Ec: 2.7.11.30
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acvrlk3, Alk3, Bmpr1a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Ad494(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: I 1 2 1
R_factor 0.197 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.810 62.850 124.991 90.00 95.85 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand
enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceGDF-5 can act as a context-dependent BMP-2 antagonist., Klammert U, Mueller TD, Hellmann TV, Wuerzler KK, Kotzsch A, Schliermann A, Schmitz W, Kuebler AC, Sebald W, Nickel J, BMC Biol. 2015 Sep 18;13(1):77. doi: 10.1186/s12915-015-0183-8. PMID:26385096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (3qb4.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (3qb4.pdb2.gz) 65 Kb
  • Biological Unit Coordinates (3qb4.pdb3.gz) 129 Kb
  • CSU: Contacts of Structural Units for 3QB4
  • Structure Factors (165 Kb)
  • Retrieve 3QB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QB4 from S2C, [Save to disk]
  • Re-refined 3qb4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QB4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QB4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qb4_A] [3qb4_B] [3qb4] [3qb4_C] [3qb4_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QB4: [TGFB ] by SMART
  • Other resources with information on 3QB4
  • Community annotation for 3QB4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science