3QCN Hydrolase date Jan 16, 2011
title Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1, Crystal Form
authors S.Sheriff
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Gamma
Chain: A
Fragment: Cytosolic Membrane Proximal Catalytic Domain
Synonym: Protein-Tyrosine Phosphatase Gamma, R-Ptp-Gamma
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpg, Ptprg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 32 2 1
R_factor 0.198 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.200 75.200 152.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.41 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSmall molecule receptor protein tyrosine phosphatase gamma (RPTPgamma) ligands that inhibit phosphatase activity via perturbation of the tryptophan-proline-aspartate (WPD) loop., Sheriff S, Beno BR, Zhai W, Kostich WA, McDonnell PA, Kish K, Goldfarb V, Gao M, Kiefer SE, Yanchunas J, Huang Y, Shi S, Zhu S, Dzierba C, Bronson J, Macor JE, Appiah KK, Westphal RS, O'Connell J, Gerritz SW, J Med Chem. 2011 Oct 13;54(19):6548-62. Epub 2011 Sep 20. PMID:21882820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3qcn.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3QCN
  • Structure Factors (138 Kb)
  • Retrieve 3QCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QCN from S2C, [Save to disk]
  • Re-refined 3qcn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QCN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QCN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qcn] [3qcn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QCN: [PTPc ] by SMART
  • Other resources with information on 3QCN
  • Community annotation for 3QCN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science