3QE1 Protein Binding date Jan 19, 2011
title Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) The C-Terminal Residues (Eseskv) Of Girk3
authors B.Balana, W.Kwiatkowski, S.Choe
compound source
Molecule: Sorting Nexin-27, G Protein-Activated Inward Rect Potassium Channel 3 Chimera;
Chain: A
Fragment: Pdz Domain (Unp Residues 39-133), Girk-3 C-Termin Residues 388-393);
Synonym: Snx27, Map-Responsive Gene Protein, Methamphetamin Responsive Transcript 1 Protein, Pdz-Protein Mrt1, Girk-3, Rectifier K(+) Channel Kir3.3, Potassium Channel, Inwardly Subfamily J Member 9;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Mrt1, Kcnj9
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: H 3
R_factor 0.158 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.789 75.789 40.939 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.68 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism underlying selective regulation of G protein-gated inwardly rectifying potassium channels by the psychostimulant-sensitive sorting nexin 27., Balana B, Maslennikov I, Kwiatkowski W, Stern KM, Bahima L, Choe S, Slesinger PA, Proc Natl Acad Sci U S A. 2011 Mar 21. PMID:21422294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (3qe1.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 3QE1
  • Structure Factors (138 Kb)
  • Retrieve 3QE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QE1 from S2C, [Save to disk]
  • Re-refined 3qe1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QE1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QE1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i3qe1, region E:1-143 [Jmol] [rasmolscript] [script source]
        - Domain d1t3qe1, region E:1-165 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qe1_A] [3qe1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QE1: [PDZ ] by SMART
  • Other resources with information on 3QE1
  • Community annotation for 3QE1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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