3QG2 Oxidoreductase, Transferase Inhibitor date Jan 24, 2011
title Plasmodium Falciparum Dhfr-Ts Qradruple Mutant (N51i+C59r+S1 V1s) Pyrimethamine Complex
authors J.Vanichtanankul, J.Yuvaniyama, S.Taweechai, P.Chitnumsub, S.Kamchonwongpaisan, Y.Yuthavong
compound source
Molecule: Bifunctional Dihydrofolate Reductase-Thymidylate
Chain: A, B
Ec: 1.5.1.3, 2.1.1.45
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 5833
Strain: V1s
Gene: Dhfr-Ts
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.486 155.272 164.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CP6, NDP, UMP BindingDB enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTrypanosomal Dihydrofolate Reductase Reveals Natural Antifolate Resistance., Vanichtanankul J, Taweechai S, Yuvaniyama J, Vilaivan T, Chitnumsub P, Kamchonwongpaisan S, Yuthavong Y, ACS Chem Biol. 2011 Jun 16. PMID:21650210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (3qg2.pdb1.gz) 192 Kb
  • LPC: Ligand-Protein Contacts for 3QG2
  • CSU: Contacts of Structural Units for 3QG2
  • Structure Factors (1180 Kb)
  • Retrieve 3QG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QG2 from S2C, [Save to disk]
  • Re-refined 3qg2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QG2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QG2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qg2_B] [3qg2_A] [3qg2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QG2
  • Community annotation for 3QG2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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