3QH1 Hydrolase Hydrolase Inhibitor date Jan 25, 2011
title Structure Of Thermolysin In Complex With N-Benzyloxycarbonyl Aspartic Acid
authors G.Birrane, B.Bhyravbhatla, M.Navia
compound source
Molecule: Thermolysin
Chain: A
Synonym: Thermostable Neutral Proteinase
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor 0.113 R_Free 0.150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.503 92.503 130.102 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.55 Å
ligand CA, NX6, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis of Aspartame by Thermolysin: An X-ray Structural Study., Birrane G, Bhyravbhatla B, Navia MA, ACS Med Chem Lett. 2014 Apr 10;5(6):706-10. doi: 10.1021/ml500101z. eCollection, 2014 Jun 12. PMID:24944748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3qh1.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3QH1
  • CSU: Contacts of Structural Units for 3QH1
  • Structure Factors (782 Kb)
  • Retrieve 3QH1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QH1 from S2C, [Save to disk]
  • Re-refined 3qh1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QH1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QH1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QH1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qh1] [3qh1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QH1
  • Community annotation for 3QH1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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