3QJ6	Protein Binding Nuclear Protein	date	Jan 28, 2011
title	The Crystal Structure Of Pwwp Domain Of Human Hepatoma-Deriv Factor 2 In Complex With H3k79me3 Peptide
authors	H.Zeng, M.F.Amaya, W.Tempel, J.R.Walker, F.Mackenzie, C.Bountra, J C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics C (Sgc)
compound		source
Molecule: Hepatoma-Derived Growth Factor-Related Protein 2 Chain: A Fragment: Unp Q7z4v5 Residues 1-93 Synonym: Hrp-2, Hepatoma-Derived Growth Factor 2, Hdgf-2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hdgfrp2, Hdgf2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) V2r-Prare Expression_system_plasmid: Pet28-Mhl
Molecule: H3k79me3 Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Synthetic Peptide. Sequence Occurs Naturally Human, Unp P68431 Residues 74-84
symmetry	Space Group: P 61	R_factor 0.234 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.934 74.934 41.764 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	M3L, SO4, UNX	enzyme
Primary reference	Structural and Histone Binding Ability Characterizations of Human PWWP Domains., Wu H, Zeng H, Lam R, Tempel W, Amaya MF, Xu C, Dombrovski L, Qiu W, Wang Y, Min J, PLoS One. 2011;6(6):e18919. Epub 2011 Jun 20. PMID:21720545

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (3qj6.pdb1.gz) 32 Kb LPC: Ligand-Protein Contacts for 3QJ6 CSU: Contacts of Structural Units for 3QJ6 Structure Factors (88 Kb) Retrieve 3QJ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3QJ6 from S2C, [Save to disk] Re-refined 3qj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QJ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3QJ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3QJ6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qj6] [3qj6_A] [3qj6_T] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3QJ6: [PWWP ] by SMART

Other resources with information on 3QJ6

Community annotation for 3QJ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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