OCA Atlas for 3QMZ

3QMZ

Motor Protein

date

Feb 07, 2011

title

Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Moto

authors

C.Cho, A.P.Carter, L.Jin, R.D.Vale

compound

source

Molecule: Cytoplasmic Dynein Heavy Chain
Chain: A, B
Fragment: Unp Residues 1364-4092
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Glutathione-S-Transferase
Chain: T, S
Engineered: Yes

Organism_scientific: Schistosoma Japonicum
Organism_taxid: 6182
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

symmetry

Space Group: P 1 21 1

R_factor

0.430

R_Free

0.430

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
174.080	118.921	200.509	90.00	90.27	90.00

method

X-Ray Diffraction

resolution

6.00 Å

Gene
Ontology

Chain	Function	Process	Component
A, B
S, T

Primary reference

Crystal structure of the dynein motor domain., Carter AP, Cho C, Jin L, Vale RD, Science. 2011 Mar 4;331(6021):1159-65. Epub 2011 Feb 17. PMID:21330489

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]

Biological Unit Coordinates (3qmz.pdb1.gz) 211 Kb

Biological Unit Coordinates (3qmz.pdb2.gz) 213 Kb

CSU: Contacts of Structural Units for 3QMZ

Structure Factors (396 Kb)

Retrieve 3QMZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3QMZ from S2C, [Save to disk]

Re-refined 3qmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QMZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3QMZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qmz] [3qmz_B] [3qmz_S] [3qmz_A] [3qmz_T]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domain found in 3QMZ: [AAA ] by SMART

Other resources with information on 3QMZ

Community annotation for 3QMZ at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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