3QRC Cell Invasion date Feb 17, 2011
title The Crystal Structure Of Ail, The Attachment Invasion Locus Yersinia Pestis, In Complex With The Heparin Analogue Sucro Octasulfate
authors S.Yamashita, P.Lukacik, N.Noinaj, S.K.Buchanan
compound source
Molecule: Attachment Invasion Locus Protein
Chain: A, B
Fragment: Unp Residues 27-182
Synonym: Ail
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 632
Gene: Ail, Ypo2905
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.204 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.382 91.382 47.496 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand C8E, GU4, YYJ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Insights into Ail-Mediated Adhesion in Yersinia pestis., Yamashita S, Lukacik P, Barnard TJ, Noinaj N, Felek S, Tsang TM, Krukonis ES, Hinnebusch BJ, Buchanan SK, Structure. 2011 Nov 9;19(11):1672-82. PMID:22078566
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3qrc.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3qrc.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3QRC
  • CSU: Contacts of Structural Units for 3QRC
  • Structure Factors (1000 Kb)
  • Retrieve 3QRC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QRC from S2C, [Save to disk]
  • Re-refined 3qrc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QRC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QRC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QRC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qrc_A] [3qrc_B] [3qrc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QRC
  • Community annotation for 3QRC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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