3QW9 Crystal structure of betaglycan ZP-C domain date
authors Lin, S.J., Jardetzky, T.S.
compound source
symmetry
R_factor
R_Free 0.2453
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand BMA, FUC, MAN, NAG enzyme
Primary referenceStructure of betaglycan zona pellucida (ZP)-C domain provides insights into ZP-mediated protein polymerization and TGF-{beta} binding., Lin SJ, Hu Y, Zhu J, Woodruff TK, Jardetzky TS, Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5232-6. Epub 2011 Mar 14. PMID:21402931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (3qw9.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 3QW9
  • CSU: Contacts of Structural Units for 3QW9
  • Structure Factors (376 Kb)
  • Retrieve 3QW9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QW9 from S2C, [Save to disk]
  • Re-refined 3qw9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QW9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QW9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QW9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qw9] [3qw9_B] [3qw9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QW9: [ZP ] by SMART
  • Other resources with information on 3QW9
  • Community annotation for 3QW9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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