3QY4 Hydrolase date Mar 02, 2011
title Crystallization And In Situ Data Collection Of Lysozyme Usin Crystal Former
authors V.Stojanoff, J.Jankoncic, M.O.A.Sommer
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Bantam,Chickens
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.173 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.150 79.150 38.018 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3qy4.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 3QY4
  • Structure Factors (194 Kb)
  • Retrieve 3QY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QY4 from S2C, [Save to disk]
  • Re-refined 3qy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QY4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QY4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qy4] [3qy4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QY4: [LYZ1 ] by SMART
    • Other resources with information on 3QY4
  • Community annotation for 3QY4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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