3QY6 Hydrolase date Mar 03, 2011
title Crystal Structures Of Ywqe From Bacillus Subtilis And Cpsb F Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases
authors H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.J.Kim, S.W.Suh
compound source
Molecule: Tyrosine-Protein Phosphatase Ywqe
Chain: A
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Bsu36240, Ywqe
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.624 59.641 57.530 90.00 101.08 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FE, MG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • phosphoprotein phosphatase a...
  • protein tyrosine phosphatase...


  • Primary referenceCrystal structures of YwqE from Bacillus subtilis and CpsB from Streptococcus pneumoniae, unique metal-dependent tyrosine phosphatases., Kim HS, Lee SJ, Yoon HJ, An DR, Kim DJ, Kim SJ, Suh SW, J Struct Biol. 2011 May 14. PMID:21605684
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3qy6.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3QY6
  • CSU: Contacts of Structural Units for 3QY6
  • Structure Factors (320 Kb)
  • Retrieve 3QY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QY6 from S2C, [Save to disk]
  • Re-refined 3qy6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QY6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QY6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qy6] [3qy6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QY6
  • Community annotation for 3QY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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