3QZV	Transcription Nuclear Protein	date	Mar 07, 2011
title	Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With H H4k12ac Peptide
authors	H.Li, A.J.Ruthenburg, D.J.Patel
compound		source
Molecule: Nucleosome-Remodeling Factor Subunit Bptf Chain: A Fragment: Bptf (Unp Residues 2865-3033) Synonym: Bromodomain And Phd Finger-Containing Transcriptio Fetal Alz-50 Clone 1 Protein, Fetal Alzheimer Antigen; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bptf, Fac1, Falz Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Rosseta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p
Molecule: Histone H4 Chain: C Fragment: Histone H4 7-17 Engineered: Yes		Synthetic: Yes Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Other_details: This Sequence Occurs Naturally In Humans.
symmetry	Space Group: C 1 2 1	R_factor 0.182 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.525 38.513 87.752 90.00 111.20 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ALY, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions., Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, Yuen M, Ueberheide B, Dou Y, Muir TW, Patel DJ, Allis CD, Cell. 2011 May 27;145(5):692-706. Epub 2011 May 19. PMID:21596426

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (3qzv.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 3QZV CSU: Contacts of Structural Units for 3QZV Structure Factors (205 Kb) Retrieve 3QZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3QZV from S2C, [Save to disk] Re-refined 3qzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3QZV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3QZV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qzv] [3qzv_C] [3qzv_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3QZV: [BROMO] [PHD ] by SMART

Other resources with information on 3QZV

Community annotation for 3QZV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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