3R04 Transferase Transferase Inhibitor date Mar 07, 2011
title The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Pote Inhibitors
authors Y.Xiang, B.Hirth, G.Asmussen, H.P.Biemann, A.Good, M.Fitzgerald, T.Gladysheva, K.Jancsics, J.Liu, M.Metz, A.Papoulis, R.Skerlj, D. R.R.Wei
compound source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi
Chain: A
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.177 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.941 97.941 80.629 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand IMD, UNQ BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors., Xiang Y, Hirth B, Asmussen G, Biemann HP, Bishop KA, Good A, Fitzgerald M, Gladysheva T, Jain A, Jancsics K, Liu J, Metz M, Papoulis A, Skerlj R, Stepp JD, Wei RR, Bioorg Med Chem Lett. 2011 May 15;21(10):3050-6. Epub 2011 Mar 16. PMID:21507633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3r04.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 3R04
  • CSU: Contacts of Structural Units for 3R04
  • Structure Factors (584 Kb)
  • Retrieve 3R04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R04 from S2C, [Save to disk]
  • Re-refined 3r04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3R04
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R04, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r04] [3r04_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R04: [S_TKc ] by SMART
    • Other resources with information on 3R04
  • Community annotation for 3R04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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