3R63 Transferase date Mar 21, 2011
title Structure Of Erk2 (Spe) Mutant (S246e)
authors O.Livnah, Y.Karamansha
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Map Kinase 1, Mapk 1, Ert1, Extracellular Signal-R Kinase 2, Erk-2, Map Kinase Isoform P42, P42-Mapk, Mitogen- Protein Kinase 2, Map Kinase 2, Mapk 2;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Mapk1, Erk2, Mapk, Prkm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.770 69.999 60.117 90.00 109.04 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • MAP kinase activity
  • MAP kinase kinase activity


  • Primary referenceNuclear extracellular signal-regulated kinase 1 and 2 translocation is mediated by casein kinase 2 and accelerated by autophosphorylation., Plotnikov A, Chuderland D, Karamansha Y, Livnah O, Seger R, Mol Cell Biol. 2011 Sep;31(17):3515-30. Epub 2011 Jul 5. PMID:21730285
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3r63.pdb1.gz) 119 Kb
  • CSU: Contacts of Structural Units for 3R63
  • Structure Factors (591 Kb)
  • Retrieve 3R63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R63 from S2C, [Save to disk]
  • Re-refined 3r63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R63
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R63, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r63_A] [3r63]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R63: [S_TKc ] by SMART
  • Other resources with information on 3R63
  • Community annotation for 3R63 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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