3R6B Cell Adhesion date Mar 21, 2011
title Crystal Structure Of Thrombospondin-1 Tsr Domains 2 And 3
authors R.C.Page, P.A.Klenotic, S.Misra, R.L.Silverstein
compound source
Molecule: Thrombospondin-1
Chain: A
Fragment: Unp Residues 434-547
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thbs1, Tsp, Tsp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst Parallel 1
symmetry Space Group: C 2 2 21
R_factor 0.235 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.364 84.817 60.707 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExpression, purification and structural characterization of functionally replete thrombospondin-1 type 1 repeats in a bacterial expression system., Klenotic PA, Page RC, Misra S, Silverstein RL, Protein Expr Purif. 2011 Jul 29. PMID:21821127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3r6b.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3R6B
  • CSU: Contacts of Structural Units for 3R6B
  • Structure Factors (77 Kb)
  • Retrieve 3R6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R6B from S2C, [Save to disk]
  • Re-refined 3r6b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R6B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R6B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r6b] [3r6b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R6B: [TSP1 ] by SMART
  • Other resources with information on 3R6B
  • Community annotation for 3R6B at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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