3R7V Transferase Transferase Inhibitor date Mar 23, 2011
title Cdk2 In Complex With Inhibitor Kvr-1-9
authors S.Betzi, R.Alam, H.Han, A.Becker, E.Schonbrunn
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cdk2, Cell Division Protein Kinase 2, P33 Protein
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.260 71.460 71.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand EDO, Z02 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3r7v.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3R7V
  • CSU: Contacts of Structural Units for 3R7V
  • Structure Factors (182 Kb)
  • Retrieve 3R7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R7V from S2C, [Save to disk]
  • Re-refined 3r7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R7V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R7V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r7v_A] [3r7v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R7V: [S_TKc ] by SMART
  • Other resources with information on 3R7V
  • Community annotation for 3R7V at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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