3R8H Oxidoreductase Oxidoreductase Inhibitor date Mar 24, 2011
title Akr1c3 Complex With Zomepirac
authors Y.Yosaatmadja, R.M.Teague, J.U.Flanagan, C.J.Squire
compound source
Molecule: Aldo-Keto Reductase Family 1 Member C3
Chain: A
Synonym: 17-Beta-Hydroxysteroid Dehydrogenase Type 5, 17-Be 3-Alpha-Hsd Type II, Brain, 3-Alpha-Hydroxysteroid Dehydrog 2, 3-Alpha-Hsd Type 2, Chlordecone Reductase Homolog Hakrb, Dihydrodiol Dehydrogenase 3, Dd-3, Dd3, Dihydrodiol Dehydro Type I, Ha1753, Indanol Dehydrogenase, Prostaglandin F Synt Pgfs, Testosterone 17-Beta-Dehydrogenase 5, Trans-1,2-Dihyd 1,2-Diol Dehydrogenase;
Ec: 1.-.-.-, 1.1.1.213, 1.1.1.112, 1.1.1.188, 1.1.1.63, 1.1 1.3.1.20;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1c3, Ddh1, Hsd17b5, Kiaa0119, Pgfs
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.294 64.035 95.983 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, NAP, ZOM enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • NADP-retinol dehydrogenase a...


    • Primary referenceCrystal structures of three classes of non-steroidal anti-inflammatory drugs in complex with aldo-keto reductase 1C3., Flanagan JU, Yosaatmadja Y, Teague RM, Chai MZ, Turnbull AP, Squire CJ, PLoS One. 2012;7(8):e43965. doi: 10.1371/journal.pone.0043965. Epub 2012 Aug 28. PMID:22937138
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3r8h.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3R8H
  • CSU: Contacts of Structural Units for 3R8H
  • Structure Factors (416 Kb)
  • Retrieve 3R8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R8H from S2C, [Save to disk]
  • Re-refined 3r8h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3R8H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R8H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r8h] [3r8h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3R8H
  • Community annotation for 3R8H at PDBWiki (http://pdbwiki.org)
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